Implements all fixes from the auto-hardening audit plan:
P1-A: Per-phase timeout watchdog — withPhaseTimeout() wraps preDispatch/dispatch/finalize;
on timeout emits warning, increments consecutiveFinalizeTimeouts, continues loop.
Configurable via preferences.auto_supervisor.phase_timeout_minutes (default: 10).
P1-B: Verified already wired (MAX_COOLDOWN_RETRIES → stopAuto+break). No change needed.
P1-C: Worker timeout in parallel orchestrator — kills workers running beyond
parallel.worker_timeout_minutes (default: 120 min) in refreshWorkerStatuses().
P2-A: Memory injection into dispatch prompts — buildMemoriesBlock() appended to
plan-milestone inlined[] context and added as memoriesSection in execute-task.
P2-B: Memory extraction retry — one 2s-delayed retry in the catch block of
extractMemoriesFromUnit(); second failure is silently swallowed (non-fatal).
P3-A: Partial verification state in DB — verificationStatus ("all_pass"/"partial"/"all_fail")
derived from verificationEvidence.exitCode array and stored in new tasks column.
New dispatch rule blocks next task when prior task has all_fail status.
P3-B: Gate omission rationale enforcement — minOmissionWords added to GateDefinition
(Q3=20, Q5=15, Q6=10, Q7=15). Short rationale upgrades verdict "omitted" → "flag".
P4-A: Doctor issues → reassess escalation — pre-dispatch health check in loop.ts detects
issues referencing slice IDs and queues reassess-roadmap sidecar instead of pausing.
P4-B: File overlap preemption — analyzeParallelEligibility() sets eligible:false when
the overlapping milestone is currently running (not just eligible/queued).
P5-A: Deferred requirement tracking — parseDeferredRequirements() added to files.ts;
completing-milestone rule warns (via logWarning) when deferred reqs targeting
the milestone were not validated before completion.
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
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